So I installed the shifter today and saved myself $250.  To my surprise, this went much smoother than expected.
A few things I wasn't sure about, hopefully someone who's more experienced will be able to enlighten.
The instruction here ( 
http://www.renntech.org/forums/index.php?showtopic=7371 ) which indicated that I should have followed the B&M instruction to step 16, then swap the cables over with the ends attached.   
To do this, I had to actually follow to step 20 which covers removing the cable tabs from the console and removing the actual console to switch the new console over. 
Did I do something wrong here ?
Then, since my new console came with the green alignment tool, I left it on while I connected the cables ends back in.   To do so, I had to "pull" on the cable a bit to "stretch" it to fit in at the mark.
Could this have caused any issues ?
Also I think I got the cable on the mark, but just in case I didn't, would this cause any issues down the line ?
 Took the car out for a spin before i put the center console back on.  The car still drives ( thank god ) and the shift is ALOT shorter.   I like the new shift motion alot, though sometimes the short distance give the feel that the gear is not 100% in, though I pushed it as far as it will go.   Is this normal ?
Also position of 3rd is slightly changed.   Previously, shifting from 2nd, it felt like it was at 12:05 ( directly above and very slightly to the right of 4th ), now it feels like its at 11:55 ( directly above and very slightly to the left of 4th ).   Is this normal ?
Its a bit of a struggle right now to get it into reverse and such, but I assume this will get smoother in a few weeks after its been broken in.