the security system consists of 3 parts that needs to match each other.
the emobilizer. located next to the ignition switch.
the alarm system located under the driver seat.
and the ECU located in the trunk.
all 3 of them need to talk with each other. if you replaced the ECU, you need to program it to accept the other 2 units.
with that said, i do not think that an issue with the security system will cause the engine not to crank. i will let more experience forum member make their comments, but meanwhile start with the simple stuff.
override the clutch switch, just to take it out of the equeison.
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