The 01 has the most flexibility. Here's a good resource:
http://www.pelicanparts.com/techarticles/Boxster_Tech/11-ENGINE-911_Engine_Swap/11-ENGINE-911_Engine_Swap.htm
Based on what I've read I'd also be leery of the early 3.4. One local indy had a 3.4 with a vibe problem that he fought for a long time to diagnose. I don't know that he ever did.
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2001 Boxster, 5 spd, Seal Grey
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