This thread may or may not be of help.
http://986forum.com/forums/boxster-general-discussions/78235-door-window-not-dropping-properly-%96-troubleshooting-check-list.html
In my case the M535 alarm option limits my car to the Porsche part.
I has been a year since I looked at this but I am not sure that the latch would prevent the window from going down, but if the latch is the problem try resoldering the connections as mentioned in my thread. If the latch is already out it is an easy fix.
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Grant
Arctic Silver 2000 Boxster S - bought with a broken engine, back on the road with the engine replaced
Green 2000 Boxster 5-speed and 1978 928 auto
1987 924S 5-speed (Sold) - Blue 2000 Boxster 5 spd (Sold)
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Boxster
Hybrid Mode
