I had (have) the same situation, but my window drops just enough to clear the top with a hairs width of clearance. It never dropped as much as it should since I installed a cheap regulator a couple of years ago. When it started catching on the top last year I took up the slack in the cable with a spacer that is wider than a zip tie (forget what I used) and since then it is OK, as mentioned above.
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Grant
Arctic Silver 2000 Boxster S - bought with a broken engine, back on the road with the engine replaced
Green 2000 Boxster 5-speed and 1978 928 auto
1987 924S 5-speed (Sold) - Blue 2000 Boxster 5 spd (Sold)
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