Are the clicks at the dash or over your shoulder...where the cables go into the transmission I know from experience, I hope not it's not there.
not dash, definitely from the back
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DJ, I don't want to alarm you when it maybe nothing, but I WOULD NOT operate my top again until I had it checked.
I had some pops and wondered, but used the top a few more times. End result, broken cables, that caused a clamshell arm to get bent. Ended up being a $538 repair at non dealeship rates.
I tried for a week but could not do anything with it so I ended up taking it the independent shop I use.
Hopefully I'm causing you to worry for no reason and your noises are something else...and simple.