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Removing your battery could reset the air fuel mix values in the ECU. If they were off quite a bit as matag suggested by a bad,failing MAF this might make the engine idle poorly for a number of miles. The pedal being soft after a fluid change and flush. If this is the same as when you purchase the car you could have a failing clutch cylinder or lines to it. Some how air must be getting into the system, if it's not affecting the brakes it is only in the clutch circuit, and most likely closer to the transmission.
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2003 Black 986. modified for Advanced level HPDE and open track days.
* 3.6L LN block, 06 heads, Carrillo H rods, IDP with 987 intake, Oil mods, LN IMS. * Spec II Clutch, 3.2L S Spec P-P FW. * D2 shocks, GT3 arms & and links, Spacers front and rear * Weight reduced, No carpet, AC deleted, Remote PS pump, PS pump deleted. Recaro Pole position seats, Brey crouse ext. 5 point harness, NHP sport exhaust
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