I don't know what you guys are going on about with all this immobilizer talk, you're making it more complicated than it needs to be.
I've had an Audi engine running inside a Boxster on the Audi ECU. You need to get the immobilizer off the Audi ECU, this is done by putting it in boot mode (shorting out a pin on the ECU) and flashing a map on that has no immobilizer. Once that's taken care of, by passing the immobilizer on the car is a case of switching the immobilizer signal that comes from the body module to earth when the ignition is turned on, this I did through a relay, then the ECU will power up.
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