You may want to make 100% sure you have the correct MAF. They all look pretty much the same but their sensor characteristics have to be matched to you particular car. The 2000 year is a cross over year. 
This is from the Pelican DIY article. Link here 
Porsche Boxster Mass Air Flow Sensor (MAF) Replacement and Troubleshooting - 986 / 987 (1997-08) - Pelican Parts Technical Article
Porsche Part #	BOSCH Part #	Application	Notes
996.606.123.00	0-280-217-007	1997-99 All Boxsters	Sensor for use with cable throttle cars
996.606.124.00	0-280-218-009	Early 2000 Boxster / Boxster S	Original sensor for E-gas cars
(thru Boxster 2.7L Chassis #98 6YS 62 0414 and #98 0YU 62 5099)
(thru Boxster S 3.2L Chassis #98 0YS 66 0257 and #98 3YU 66 2413)
986.606.125.00		Mid 2000-04 Boxster / Boxster S	First updated sensor for E-gas cars
(discontinued and replaced with version 125.01 below)
986.606.125.01	0-280-218-055	Mid 2000-04 Boxster / Boxster S	Latest updated sensor
987.606.125.00	0-280-218-145	2005- All Boxster / Cayman	Integrated housing design