When I swapped out my '01 top for the '03 with glass rear window, there was a little bit of play on the 6 frame mounting bolts down by the clamshell. Figure out which way it needs to move, get a second set of hands, and loosen the 6 bolts on both sides. Pull/push the top and maintain force in that direction while your helper tightens down the bolts again.
My initial install left a slight gap on the drivers side window weatherstripping, but is perfect after realignment.
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2001 Lapis Blue Boxster S Tip (stock), 2001 Guards Red Boxster 5-speed (not very stock)
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