I think some people recommend placing a towel inside the fold of the plastic window (if you have one) to prevent scratches/sticking if you are going to leave it down for an extended period and enjoy spirited driving.
I don't keep it down long enough for that, but I do always wipe down the exterior of the window with a microfiber cloth before putting the top down.
-james
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'01 Boxster S, 51k miles
'05 Mazda 6 Grand Touring Wagon
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