soft top

anyone have a problem like this..

after i have the hood down and i want to put it up i press the button as normal and it goes up fine, i get to the last stage when it needs to latch and sometimes the windows go up 3 quaters.. i relatch it again and again and then the windows come up... sometimes i can get it first time but someone it needs a few goes.. i kind of know as it feels better when it latches correctly,