...so you need to "track the tracker"......the area where the cover stores when the top is down is really pretty much an enclosed area. I'm not sure how big or what color the tracker is but usually a bright light scoping the area may help.
Hopefully it won't interfere with the raising or lowering mechanism.....
IF it were me, I search as best I can but IF not located I'd probably just forget about it.....think of this way, IF someone wants to steal the car they too might never see a tracker which is good! You'll always know where your car is!
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98' Boxster
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