Just curious why you didn't put a matching DME and immobilizer (with key fob) from a 3.2 in your car when you did the swap? I think I would try the correct DME first before spending a ton of money on parts and trouble shooting. You should be able to source a set for around $500. Of course, I suppose the immobilizer wires might have changed from 99 to 01 but easy enough to test if you order parts that can be returned.
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