I say go for it! I would do some googling and see if you can find out what the inside looks like before you start cutting though. It might not be feasible to exit in the middle. I spent today cutting up a 987 muffler in an attempt to fit it in my 986. I have a dansk sausage on mine but after closer examination, the pipes used inside it are almost as small as the factory secondary's. You and I have larger motors and I think we're loosing power by not using anything bigger than 52mm. That's the size of the exhaust in the 996. The 986 secondary is only 36mm and then expands to 42 at the U. I'm trying to run 52mm on everything after the headers.
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Woody
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