Here's a link to the information I used when I installed my 6 channel amp.
Pinout for 6x40 M490 amp - 986 Series (Boxster, Boxster S) - RennTech.org Forums
I had the connector from my 4 channel amp and I just modified the connector to fit the 6 channel amp outputs as shown in the thread. I know you are facing a different situation, but there may be some helpful information and links to other threads that may help you.
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2000 Arctic Silver/Black, Hard Top, On Board Computer
PNP Rear Speakers, HAES 6-Channel Amp, Avic Z140BH,
Painted Bumperettes, 2004 (OEM) Top, Homelink integrated in dash with Targa switch, 997 Shifter, Carrera Gauge Cluster with silver gauge faces, heated 997 adaptive sports seats, Litronics, silver console
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