[AKnowles]

I had the same issue on my 99 after changing the battery. The solution was to reset the electronics. Lower the window using the switch and once all the way down hold it for ten seconds. Do the same thing on the up stroke. Repeat for the other window (if needed). See if that helps. If not, I'd disconnect the battery and repeat it to see if that resolves the situation (i.e. just an electronic memory issue) before looking at hardware.