You won't be able to replace just the head unit due to the fiber optic issue in your car. A good stereo shop should be able to install a new head unit and amp and wire the existing speakers into it though. Spending a little more with an active crossover so the subs in the rear deck will get the right frequency is also recommended.
If I were you I'd just see if you can add an iPod adapter to what you have to get that functionality.
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